uniprotkb documentation of superfamilies, patterns and profiles Search Results


uniprot knowledgebase uniprotkb databases  (Biotechnology Information)
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Biotechnology Information uniprot knowledgebase uniprotkb databases
Uniprot Knowledgebase Uniprotkb Databases, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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uniprot knowledgebase uniprotkb  (Biotechnology Information)
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Biotechnology Information uniprot knowledgebase uniprotkb
Uniprot Knowledgebase Uniprotkb, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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uniprot knowledgebase (uniprotkb) release 2015_12  (SIB Swiss Institute of Bioinformatics)
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SIB Swiss Institute of Bioinformatics uniprot knowledgebase (uniprotkb) release 2015_12
Uniprot Knowledgebase (Uniprotkb) Release 2015 12, supplied by SIB Swiss Institute of Bioinformatics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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uniprotkb release 2017_02  (SIB Swiss Institute of Bioinformatics)
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SIB Swiss Institute of Bioinformatics uniprotkb release 2017_02
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uniprot knowledgebase (uniprotkb)/swiss-prot  (SIB Swiss Institute of Bioinformatics)
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Uniprot Knowledgebase (Uniprotkb)/Swiss Prot, supplied by SIB Swiss Institute of Bioinformatics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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uniprot knowledgebase keyword database  (SIB Swiss Institute of Bioinformatics)
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SIB Swiss Institute of Bioinformatics uniprot knowledgebase keyword database
Functional classification of the differentially expressed genes (DEGs). ( A , B ) Gene ontology (GO) enrichment terms were categorized into biological process (BP), cellular component (CC), or molecular function (MF) for upregulated DEGs ( A ) and downregulated DEGs ( B ). Symbol codes for enriched subcategory terms are shown on the y axis, and fold enrichment is presented on the x axis of the horizontal histogram. Numbers of genes for each enriched subcategory are shown to the right of the respective horizontal bar in the histogram. A list of enriched subcategory terms is shown. ( C , D ) Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment (left panels) and <t>UniProtKB</t> keyword (right panels) analyses were conducted to further classify upregulated ( C ) and downregulated ( D ) DEGs. The enriched term and the respective number of observed genes is shown to the left or right of the histogram, respectively.
Uniprot Knowledgebase Keyword Database, supplied by SIB Swiss Institute of Bioinformatics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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universal protein resource uniprot knowledgebase  (Biotechnology Information)
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Biotechnology Information universal protein resource uniprot knowledgebase
Functional classification of the differentially expressed genes (DEGs). ( A , B ) Gene ontology (GO) enrichment terms were categorized into biological process (BP), cellular component (CC), or molecular function (MF) for upregulated DEGs ( A ) and downregulated DEGs ( B ). Symbol codes for enriched subcategory terms are shown on the y axis, and fold enrichment is presented on the x axis of the horizontal histogram. Numbers of genes for each enriched subcategory are shown to the right of the respective horizontal bar in the histogram. A list of enriched subcategory terms is shown. ( C , D ) Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment (left panels) and <t>UniProtKB</t> keyword (right panels) analyses were conducted to further classify upregulated ( C ) and downregulated ( D ) DEGs. The enriched term and the respective number of observed genes is shown to the left or right of the histogram, respectively.
Universal Protein Resource Uniprot Knowledgebase, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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ncbi blast  (InterPro Inc)
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InterPro Inc ncbi blast
Functional classification of the differentially expressed genes (DEGs). ( A , B ) Gene ontology (GO) enrichment terms were categorized into biological process (BP), cellular component (CC), or molecular function (MF) for upregulated DEGs ( A ) and downregulated DEGs ( B ). Symbol codes for enriched subcategory terms are shown on the y axis, and fold enrichment is presented on the x axis of the horizontal histogram. Numbers of genes for each enriched subcategory are shown to the right of the respective horizontal bar in the histogram. A list of enriched subcategory terms is shown. ( C , D ) Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment (left panels) and <t>UniProtKB</t> keyword (right panels) analyses were conducted to further classify upregulated ( C ) and downregulated ( D ) DEGs. The enriched term and the respective number of observed genes is shown to the left or right of the histogram, respectively.
Ncbi Blast, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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uniprotkb  (InterPro Inc)
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InterPro Inc uniprotkb
The databases chosen for our analyses, including the web address (URL) of each database
Uniprotkb, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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kinannote  (SourceForge net)
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SourceForge net kinannote
The databases chosen for our analyses, including the web address (URL) of each database
Kinannote, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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proteins from uniprotkb  (InterPro Inc)
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InterPro Inc proteins from uniprotkb
Coverage of the major sequence databases <t> UniProtKB, </t> UniParc and UniMES by InterPro signatures
Proteins From Uniprotkb, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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uniprotkb  (Biomodels LLC)
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Biomodels LLC uniprotkb
Coverage of the major sequence databases <t> UniProtKB, </t> UniParc and UniMES by InterPro signatures
Uniprotkb, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


Functional classification of the differentially expressed genes (DEGs). ( A , B ) Gene ontology (GO) enrichment terms were categorized into biological process (BP), cellular component (CC), or molecular function (MF) for upregulated DEGs ( A ) and downregulated DEGs ( B ). Symbol codes for enriched subcategory terms are shown on the y axis, and fold enrichment is presented on the x axis of the horizontal histogram. Numbers of genes for each enriched subcategory are shown to the right of the respective horizontal bar in the histogram. A list of enriched subcategory terms is shown. ( C , D ) Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment (left panels) and UniProtKB keyword (right panels) analyses were conducted to further classify upregulated ( C ) and downregulated ( D ) DEGs. The enriched term and the respective number of observed genes is shown to the left or right of the histogram, respectively.

Journal: International Journal of Molecular Sciences

Article Title: Combined Transcriptomic and Proteomic Profiling of E. coli under Microaerobic versus Aerobic Conditions: The Multifaceted Roles of Noncoding Small RNAs and Oxygen-Dependent Sensing in Global Gene Expression Control

doi: 10.3390/ijms23052570

Figure Lengend Snippet: Functional classification of the differentially expressed genes (DEGs). ( A , B ) Gene ontology (GO) enrichment terms were categorized into biological process (BP), cellular component (CC), or molecular function (MF) for upregulated DEGs ( A ) and downregulated DEGs ( B ). Symbol codes for enriched subcategory terms are shown on the y axis, and fold enrichment is presented on the x axis of the horizontal histogram. Numbers of genes for each enriched subcategory are shown to the right of the respective horizontal bar in the histogram. A list of enriched subcategory terms is shown. ( C , D ) Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment (left panels) and UniProtKB keyword (right panels) analyses were conducted to further classify upregulated ( C ) and downregulated ( D ) DEGs. The enriched term and the respective number of observed genes is shown to the left or right of the histogram, respectively.

Article Snippet: We also employed the UniProt Knowledgebase (UniProtKB) keyword database (EMBL-EBI, Cambridge, UK; SIB Swiss Institute of Bioinformatics, Geneva, Switzerland; PIR, Washington, DC, USA) to further characterize the retrieved pathways pertaining to DEGs.

Techniques: Functional Assay

The databases chosen for our analyses, including the web address (URL) of each database

Journal: Bioinformatics

Article Title: On patterns and re-use in bioinformatics databases

doi: 10.1093/bioinformatics/btx310

Figure Lengend Snippet: The databases chosen for our analyses, including the web address (URL) of each database

Article Snippet: InterPro; UniProtKB , 435.

Techniques:

Table summarizing the number of sentences following the transient and missing origin propagation patterns for each database

Journal: Bioinformatics

Article Title: On patterns and re-use in bioinformatics databases

doi: 10.1093/bioinformatics/btx310

Figure Lengend Snippet: Table summarizing the number of sentences following the transient and missing origin propagation patterns for each database

Article Snippet: InterPro; UniProtKB , 435.

Techniques:

Table summarizing the distribution of all unique sentences shared between the analyzed databases

Journal: Bioinformatics

Article Title: On patterns and re-use in bioinformatics databases

doi: 10.1093/bioinformatics/btx310

Figure Lengend Snippet: Table summarizing the distribution of all unique sentences shared between the analyzed databases

Article Snippet: InterPro; UniProtKB , 435.

Techniques:

Coverage of the major sequence databases UniProtKB, UniParc and UniMES by InterPro signatures

Journal: Nucleic Acids Research

Article Title: InterPro: the integrative protein signature database

doi: 10.1093/nar/gkn785

Figure Lengend Snippet: Coverage of the major sequence databases UniProtKB, UniParc and UniMES by InterPro signatures

Article Snippet: Proteins from UniProtKB that do not match any of the signatures in InterPro's member databases have been added to our match XML file.

Techniques: Sequencing